The xenacoelomorph gonopore is homologous to the bilaterian anus

The xenacoelomorph gonopore is homologous to the bilaterian anus Description of the data and file structure The submitted files include all phylogenetic tree alignments mentioned in the supplementary data of the article titled "The xenacoelomorph gonopore is homologous to the bilaterian anus". Files and variables File: wnt_all_trimmed_alignment.fa Description: The trimmed alignment of the phylogenetic tree for Wnt family genes (Extended data Fig. 2) File: wnt_acoels_only_trimmed_alignment.fa Description: The trimmed alignment of Wnt tree includes xenacoelomorpha species only File: wnt_ipu_trimmed_alignment.fa Description: The trimmed alignment of Wnt tree includes only one acoel species, Isodiametra pulchra File: wnt_hmi_trimmed_alignment.fa Description: The trimmed alignment of Wnt tree includes only one acoel species, Hofstenia miamia File: wnt_cma_trimmed_alignment.fa Description: The trimmed alignment of Wnt tree includes only one acoel species, Convolutriloba macropyga File: wnt_mst_trimmed_alignment.fa Description: The trimmed alignment of Wnt tree with only one acoel species, Meara stichopi File: frizzled_trimmed_alignment.fa Description: The trimmed alignment of Frizzled9/10 gene tree File: gsc_trimmed_alignment.fa Description: The trimmed alignment of Gsc gene tree File: gata456_trimmed_alignment.fa Description: The trimmed alignment of Gata456 gene tree File: foxa_trimmed_alignment.fa Description: The trimmed alignment of FoxA gene tree File: bra_trimmed_alignment.fa Description: The trimmed alignment of Brachyury gene tree File: cdx_trimmed_alignment.fa Description: The trimmed alignment of Caudal gene tree File: evx_trimmed_alignment.fa Description: The trimmed alignment of Evx gene tree File: nk2.1_trimmed_alignment.fa Description: The trimmed alignment of Nk2.1 gene tree File: hnf4_trimmed_alignment.fa Description: The trimmed alignment of HNF4 gene tree Code/software These amino acid sequence alignments were aligned using MAFFT (v7.487) with the L-INS-i strategy (--amino --localpair --maxiterate 1000) to account for local homology and maximize alignment accuracy. Poorly aligned regions were trimmed using trimAl (v1.4.rev15). The best-fitting evolutionary model for each gene tree was selected using ModelTest-NG (v0.1.7), and maximum likelihood phylogenies were reconstructed using RAxML-NG (v1.2.1).