S1 Table -

Tab A. CACTA-like elements identified in Arabidopsis thaliana. Tab B. Pack-MULEs identified in rice by packFinder. Tab C. TIR sequences and parameters used to identify Pack-TYPE elements. Tab D. Elements identified with packFinder in O. sativa and Z. mais genomes using the TIRs in Tab C in S1 Table. Tab E. Number of elements identified by packFinder and their functional designations. Tab F. TEs used to produce the phylogenetic trees displayed in Fig 3. Tab G. The most abundant core TIR sequences (10 bp) in the maize and rice genomes (obtained with TIR-Learner), used to identify the expanded set of Pack-TYPE TEs in Tab H in S1 Table. Tab H. Elements identified with packFinder in the O. sativa and Z. mais genomes using TIR-Learner TIRs (Tab G in S1 Table). Tab I. Number of non-overlapping maize and rice loci captured by each Pack-TE identified by BLAST. Tab J. Enrichment analysis of the genes captured by Pack-TYPE TEs. Tab K. Number of Pack-TYPE TEs overlapping genes.
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