Matrix N, TEs vs promoters, 100kb-wide windows, hg38

Regulatory susceptibility matrix N, with rows as hg38 protein coding genes and columns as TE subfamilies. A TE is counted if it is found within 100kb of a gene promoter, strictly out of any promoter and any exon belonging to that gene. Since hg38 contains inflated SVA integrants, most of which small fragments unlikely to be of functional importance, we filtered out SVA integrants shorter than 200bp.