Additional file 2 of Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen

Additional file 2 Supplementary Table S1: Phenotypic trait values used for GWAS. The percentage of leaf area covered by lesion (PLACL); ρleaf is the pycnidia count per cm2 of leaf area; ρlesion is defined as the total number of pycnidia divided by per cm2 lesion area. Tolerance is expressed as the pycnidia count divided by PLACL. Supplementary Table S2: Groups of clonal genotypes identified in the GWAS population with information about the collection time point and cultivar of origin. The clonal genotype columns provides a unique identifier. See Singh et al. (2020) for more detailed analyses. Supplementary Table S3: List of significantly associated SNPs above 5% FDR for pycnidia counts. Supplementary Table S4: Number of isolates from populations on different continents analyzed for transposable element content. Total assembled genomes and total of isolates per population where a scaffold was retrieved containing both genes Zt09_1_01590 and Zt09_1_01591.