TE.zip

Repetitive elements predicted by RepeatMasker (version 4.1.7-p1) for 25 grassland plant species. Species list: Species_code Species_name GerPra Geranium pratense LeuVul Leucanthemum vulgare agg. TriFla Trisetum flavescens LotCor Lotus corniculatus CreBie Crepis biennis BelPer Bellis perennis DauCar Daucus carota PruVul Prunella vulgaris TriPra Trifolium pratense PriVer Primula veris HolLan Holcus lanatus AloPra Alopecurus pratensis GalMol Galium mollugo agg. KnaArv Knautia arvensis MedVar Medicago x varia PlaLan Plantago lanceolata LuzCam Luzula campestris VerCha Veronica chamaedrys ArrEla Arrhenatherum elatius TriDub Trifolium dubium LatPra Lathyrus pratensis VicCra Vicia cracca RanAcr Ranunculus acris PlaMed Plantago media AjuRep Ajuga reptans Analyse pseudo code: for i in {01..25}; do # the number corresponding to a particular species outputDir="BMK230426-BJ202-01P000${i}" isoform="path/to/isoSeqData/BMK230426-BJ202-01P000${i}" path/to/RepeatMasker -pa 16 -lib Viridiplantae.fa -dir $outputDir $isoform done;