Bioinformatic and statistical scripts to analyze acorn mycobiota structure and composition

This dataset contains R-scripts to perform bioinformatic and statistical analysis on acorn associated fungal communities (Fort et al., Maternal effects and environmental filtering shape seed fungal communities in oak trees. Submitted). Bioinformatic script was applied to raw sequences after paired-end sequences were joined using PEAR v0.9.10 (Zhang et al., 2014). Raw sequences are available at https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551388. Metadata and ASV tables are also provided allowing to use statistical analysis scripts without running the bioinformatic steps.