Data and scripts in Huang et al. "Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota"

This compressed file includes six folders:1_single_protein_trees_of_orthologs:Alignments and treefiles used in the "Selection of orthologs for phylogenetic analysis of Woesearchaeota".2_phylogenetic_trees_Woese&Pace:Alignments and treefiles of 152 MAGs for phylogenetic analysis based on 15 ribosomal proteins and the top-50% ranked orthologs3_16S_rRNA_gene:Alignments and treefiles used in the 16S rRNA gene phylogenetic analysis4_individual_protein_trees:Alignment and treefiles used in the phylogenetic analyses in fig.4, suppl. fig6-7, suppl. fig9-22 and suppl. fig24-415_protein_families_52_MAGs:The file includes alignment and treefile of phylogenetic analysis of 52 MAGs, ALE reconciliation results and protein families files6_scriptsPython scripts used in phylogenetic analysis and R scripts used in ecological analysis7_protein_filesProteins faa files and annotation files