Resolving Organoid Brain Region Identities by Mapping Single-Cell Genomic Data to Reference Atlases

Data underlying the figures in the publication “Resolving organoid brain region identities by mapping single-cell genomic data to reference atlases”, published in Cell Stem Cell, 2021, 28, 1148–1159.

https://www.sciencedirect.com/science/article/pii/S1934590921000655

Table of contents:

1. patscreen_srt.rds; Numerical data for Figure 7: RNA-seq data of a patterning screen in organoids with an array of small molecules. The dataset is in the rds data format, which can be opened in the R programming language using the function `readRDS()`. Once opened, the dataset is a Seurat object (https://satijalab.org/seurat/) and contains both the transcript counts and the metadata for all samples in the screen. The raw data used in figure 7 was also deposited in ArrayExpress (https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-10037/)