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alfa-synuclein spectra for the paper "Linear discriminant analysis reveals hidden patterns in NMR chemical shifts of intrinsically disordered proteins"

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Zenodo2022-08-29 更新2026-05-25 收录
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The experimental data for the paper "Linear discriminant analysis<br> reveals hidden patterns in NMR chemical shifts of intrinsically<br> disordered proteins" - four spectra of an intrinsically disordered<br> protein alfa-synuclein: 3D HNCO 4D HabCab(CO)NH 4D (H)N(CA)CONH 4D HNCACO All spectra were acquired using non-uniform sampling (schedules included<br> as 'schedule.txt' files in a format of 'Kozminski' method in VnmrJ). 3D<br> spectrum (HNCO_nuFT.ucsf) was processed using multidimensional Fourier transform<br> (http://nmr.cent3.uw.edu.pl/software, program 'toastd'). Additionally, we provide a spectrum cleaned of NUS artifacts (HNCO_artifacts_cleaned.ucsf) using program handy (http://nmr.cent3.uw.edu.pl/software, program 'handy'). 4D spectra were processed using sparse multidimensional Fourier transform<br> (http://nmr.cent3.uw.edu.pl/software, program 'reduced'), based on a<br> HNCO peak list ('peak.list' file). Files with processing parameters are<br> included as 'parameters.txt' files. The resulting spectra are included as Sparky .ucsf files. The files for<br> 4D spectra are the collections of 2D cross-sections with the<br> cross-section number corresponding to the numbering of HNCO peaks in the<br> 'peak.list' file. The folder 'Application2_assignment_transfer' contains Sparky 'ucsf' and 'save' files of the two-dimensional NH projection of the HNCO spectrum with the experimental (HSQC_exp.list) and BMRB (HSQC_bmrb.list) peak lists read into the spectrum. The experimental peaks are marked with arbitrary numbers and BMRB peaks - with names of the preceding aa-residues. The correct assignment is shown in the file 'assignment.txt'.

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2022-08-29
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