Native structure is here taken as the Rfam consensus structure from the seed alignments of these elements of HCV and HIV. Two measures are given. The average distance represents the average base pair
Files used to create SVG illustrations shown in Supplementary figure S2 of the paper:1. LinearTurboFold alignments/structures2. GFF annotation files used to color structure (results of annotate_intron
The 7SK RNA is a small nuclear RNA that is involved in the regulation of Pol-II transcription. It is very well conserved in vertebrates, but shows extensive variations in both sequence and structure a
S3A. The list of 993 mutations in six rubella isolates (from [20]). Sequences are shown in DNA format (T instead of U) to maintain compatibility with other outputs of the mutation signature R-script.
The bpRNA-NF-15.0 is an RNA sequence and secondary structure dataset that exclusively includes new families from the ones contained in bpRNA-1m.Using bpRNA-1m as a training dataset and bpRNA-NF-15.0 a