CFdb: interactomes
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https://zenodo.org/record/8008077
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资源简介：
This upload contains predicted interactomes for 23 species derived from meta-analysis of co-fractionation mass spectrometry (CF-MS) data. The following individual organisms are represented:
Arabidopsis thaliana
Brassica oleracea
Caenorhabditis elegans
Chaetomium thermophilum
Chlamydomonas reinhardtii
Dictyostelium discoideum
Drosophila melanogaster
Glycine max
Homo sapiens
Mus musculus
Nematostella vectensis
Oryza sativa
Plasmodium berghei
Plasmodium falciparum
Plasmodium knowlesi
Saccharomyces cerevisiae
Strongylocentrotus purpuratus
Triticum aestivum
Trypanosoma brucei
Xenopus laevis
Escherichia coli
Anabaena sp. PCC 7120
Synechocystis sp. PCC 6803
Network inference was performed by training a random forest classifier on known complexes (from CORUM or EcoCyc, for eukaryotes and prokaryotes respectively) to predict interacting protein pairs in cross-validation. Files include the complete classifier scores for every possible protein pair, sorted in descending order. The resulting networks can then be thresholded at an arbitrary precision.
创建时间：
2023-10-24
