Supporting data for the manuscript "Nerpa: a tool for discovering biosynthetic gene clusters of nonribosomal peptides"

Name: Supporting data for the manuscript "Nerpa: a tool for discovering biosynthetic gene clusters of nonribosomal peptides"
Creator: St. Petersburg State University, Sirius University of Science and Technology; University of California San Diego; St. Petersburg State University, Sirius University of Science and Technology, St. Petersburg Electrotechnical University "LETI"; Louis-Félix Nothias; Carnegie Mellon University
Published: 2021-09-13T00:00:00+08:00

Zenodo2021-09-13 更新2026-04-07 收录

非核糖体肽合成酶

生物合成基因簇

数据链接：

https://zenodo.org/record/5503983 数据链接链接失效反馈

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资源简介：

Preprocessed structures of nonribosomal peptides [NRPs] and genomic sequences (reference and representative genomes, biosynthetic gene clusters [BGCs]) used in the benchmark experiments in the Nerpa paper. Files description mibig_nrp_bacteria_preprocessed.tar.gz contains the preprocessed dataset of 194 bacterial NRP BGCs from the MIBiG database. mibig_nrp_bacteria_summary.tsv contains metadata for the MIBiG-NRP dataset. bacterial_ref_and_repr_genomes_20210604_preprocessed.tar.gz contains the preprocessed dataset of 13,399 reference and representative bacterial genomes from the NCBI RefSeq database (retrieved on 2021/06/04). bacterial_ref_and_repr_genomes_20210604_summary.txt contains metadata for the RefSeq dataset. pnrpdb_preprocessed.info contains the Nerpa-preprocessed pNRPdb database, a database of 8,368 known and putative NRP structures. pnrpdb_summary.tsv contains the pNRPdb database metadata.

提供机构：

St. Petersburg State University, Sirius University of Science and Technology; University of California San Diego; St. Petersburg State University, Sirius University of Science and Technology, St. Petersburg Electrotechnical University "LETI"; Louis-Félix Nothias; Carnegie Mellon University

创建时间：

2021-09-13