Data for "Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis"
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下载链接：
https://zenodo.org/record/3966233
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资源简介：
The files named df_scran.csv, df_seurat.csv, df_zinbwave.csv, df_dca.csv, and df_scvi.csv contain one row per configuration that we ran successfully.
The files named DATASET.METHOD.h5ad are encoded with anndata v0.7.0 (be careful as they are not readable with previous versions) and contain 100 embeddings each. The embeddings are in the obsm attribute of the object. All the embeddings can be listed with the obsm_keys() method. The name of the embedding contains the parameters used to generate that embedding and are written like that method=zinbwave.dims=10.epsilon=1000.features=300.gene_covariate=0.
For questions on this dataset please contact fraimundo@google.com
创建时间：
2020-07-30
