Processed source data and analysis code for evidence-bounded SGTA proteogenomic analysis in lung adenocarcinoma

This research compendium contains analysis scripts, processed statistical outputs, figure-level source data, figure previews, provenance records, and audit files supporting a multi-omic study of SGTA in lung adenocarcinoma. Version 1.2.0 adds complete-pair RNA–protein sensitivity analyses, patient-subsampling network re-discovery, same-tree cluster controls, and exact-size discovery-matched anchor-module nulls. These analyses establish reproducible SGTA protein elevation but limit network inference to descriptive edge concordance conditional on frozen discovery membership; they do not establish stable membership or SGTA-specific network organisation. No new primary patient or experimental data were generated. Raw TCGA, GEO, CPTAC/PDC, and DepMap matrices are not redistributed. Original code is licensed under MIT, and study-generated processed outputs and documentation are licensed under CC BY 4.0.