TABLE S6, PANGENOME

Information for pangenome analyses of Bifidobacterium species used in this study. A) 107 published B. breve genomes used in the analyses; B) 310 published genomes B. longum genomes used in the analyses; C) homologous gene clusters (HGCs) of B. breve generated in metapangenome analyses using 26 in-house MAGs and 107 published genomes; D) HGCs of B. longum generated using 26 in-house MAGs and 107 published genomes; E) statistics of metapangenome analyses of B. breve and B. longum genomes; F) strains-specific HGCs that was only observed in B. breve in this cohort; G) enriched B. breve HGCs; H) COG functions in B. breve genomes enriched in this study comparing the other genomes of genBank; I) PFAM functions in B. breve genomes enriched in this study comparing the other genomes of genBank; J) ANI (Average Nucleotide Identity) score of the B. breve genomes used in this study.