Ld Estimated From 1K Genomes Ceu Population

These data contain estimated pairwise r^2 for variants with allele frequency greater than 0.05 in the 1000 Genomes CEU population. They were estimated using LDshrink (https://github.com/stephenslab/LDshrink). R^2 is only reported when the estimate is greater than 0.1. For each chromosome there are two files: chr<chr>_AF0.5_0.1.RDS is an R object containing a data frame with three columns: rowsnp, colsnp, and r2 chr<chr>_AF0.5_snpdata.RDS is an R object containing a data frame with information for every SNP meeting the allele frequency cutoff.