Additional file 2: of GMASS: a novel measure for genome assembly structural similarity

Table S1. Statistics of a reference assembly and 11 descendant assemblies, as well as CSBs constructed between them. AS denotes the scaffolds contained each assembly, and SF represents the CSBs constructed between each assembly and the reference assembly. Table S2. Statistics of analyzed assemblies and reference sequences. In the case of the GAGE dataset, the statistics of the reference sequences were calculated using the human chromosome 14 (HG38/GRCh38 assembly) downloaded from the UCSC genome browser [30]. In the case of the Assemblathon 1 dataset, the teams’ names constructed each assembly are written in parentheses, and the statistics of reference are the averages of statistics of two haplotypes used in the study. Table S3. Li(A1, A2), Ci(A1, A2) and Si scores of assembly pairs obtained from the GAGE dataset in different resolutions. In the “Combination” column, the name of an assembly used as reference appears first. Table S4. Statistics of each assembly and CSBs of assembly pairs obtained from the GAGE dataset. AS denotes the scaffolds in each assembly, and SF represents the CSBs constructed between each assembly pair. In combination column, front assembly is used as reference assembly and rear assembly is used as target assembly. Table S5. Li(A1, A2), Ci(A1, A2) and Si scores of assembly pairs obtained from the Assemblathon 1 dataset in different resolutions. In the “Combination” column, the name of an assembly used as reference appears first. Table S6. Statistics of each assembly and CSBs of assembly pairs obtained from the Assemblathon1 dataset. AS denotes the scaffolds in each assembly, and SF represents the CSBs constructed between each assembly pair. In combination column, front assembly is used as reference assembly and rear assembly is used as target assembly. Used assemblers are omitted. (XLSX 84 kb)