Assembly and annotation of Fragilaria radians transcriptome

Accessory files generated upon assembly and annotation of <i>Fragilaria radians</i> transcriptome.<br>1) File_1_orthoGroups.by_group.zip -- Assignment of orthogroups by OrthoMCL for <i>Fragilaria radians</i> transcripts<br><br>2) File_2_Trinotate_report.csv.zip -- Trinotate annotation for <i>Fragilaria radians</i> transcripts<br><br>3) File_3_salmon.isoform.TMM.EXPR.matrix.E-inputs.zip -- List of assembled transcripts ordered by expression level.<br>Trinotate accessory scripts was used to generate this file. See https://github.com/trinityrnaseq/trinityrnaseq/wiki/Trinity-Transcript-Quantification#build-transcript-and-gene-expression-matrices for details.<br>4) oases_MA.fa.gz -- transcriptome assembly by Oases (merge-&gt;assemble)<br>5) trinity_MA.fa.gz -- transcriptome assembly by Trinity (merge-&gt;assemble)<br>6) oases_AM.fa.gz -- transcriptome assembly by Oases (assemble-&gt;merge)<br>7) trinity_AM.fa.gz -- transcriptome assembly by Trinity (assemble-&gt;merge)<br><br>8) Table_S1.xlsx -- Statistics of contaminated transcripts expressed above the 95th percentile level.<br>9) Table_S2.xlsx -- Transcripts annotated on the basis of Trinotate, blastp hits in diatom proteomes and protist hits against NCBI NR.<br>10) Table_S3.xlsx -- DE-statistics computed for 5,959 NExp/DSLT and 858 DSLT dark/light transcripts.<br>