Supplemental Material for Grabowski et al., 2024

Files to accompany the analysis of the Arachis hypogaea Line8 v1 genome assembly.

File S1.txt: The percentages of sequence for each annotation within 5Mb windows across the Line8 genome assembly. 

File S2.txt: Positions of syntentic regions and and inversions between Line8 homeologs.

File S3.txt: Percent sequence identity, in 100kb windows, for alignments of A.duranensis and A.ipaensis to the full Line8 assembly without Arahy.09_alt.

File S4.txt:  Percent sequence identity, in 100kb windows, for alignments of A.duranensis and A.ipaensis to Line8 subgenomes A and B separately.

File S5.vcf.gz:  VCF containing the SNPs for Line8 when mapped to the Tifrunner assembly, including predicted effects of SNPs