Additional file 1: Table S1. of Genomic profiling of exogenous abscisic acid-responsive microRNAs in tomato (Solanum lycopersicum)

List of Known miRNAs identified in this study, and their expression levels and the predicted target genes. Table S2. List of novel miRNAs identified in this study, and their expression levels and the predicted target genes. Table S3. The list of novel miRNAs identified in this study that have been updated in miRNase 21.0 database. Table S4. The mature and precursor sequences of the novel miRNAs, and the corresponding secondary structures. Table S5. The differential expression levels in the control (C1D) and ABA-treatment (A1D) libraries of known miRNAs. Table S6. The differential expression levels in the control (C1D) and ABA-treatment (A1D) libraries of the novel miRNAs. Table S7. Selected miRNAs (TPM >10) and the expression levels of their targets (FPKM). Table S8. List of identified miRNAs that are linked to transcript factors and disease resistance genes. Table S9. Sequences of primers used for stem-loop qRT-PCR analysis. Table S10. Comparison of expression levels between RNA-seq expression and quantitative real-time PCR. (XLSX 482 kb)