Analysis of multi-gene matrices from chloroplast, mitochondrial, and nuclear sequences

1. Files from the 82-taxon, 78-gene cpDNA analysis. This compressed file includes: 82-taxon, 78-gene cpDNA nucleotide, AA, and RY-coding , and 1st & 2nd condon only alignments; associated AA tree, RY-coding tree,78 individual gene trees, and tree of 78-gene 1st & 2nd condon positions only; trees and sorted matrices from method to remove highly variable sites. 2. Files from the 79-taxon, 4-gene mtDNA analysis. This compressed file includes: 79-taxon, 4-gene mtDNA nucleotide, AA, RY-coding and 1st & 2nd condon only alignments; associated AA tree, RY-coding tree, 4 individual gene trees, and tree of 4-gene 1st & 2nd condon positions only; trees and sorting matrices method to remove highly variable sites. 3. Files from the 92-taxon, 5-gene nuDNA analysis. This compressed file includes: 92-taxon, 5-gene nuDNA nucleotide, AA, RY-coding, and 1st & 2nd condon only alignments; associated AA tree, RY-coding tree, 5 individual gene trees, and tree of 5-gene 1st & 2nd condon positions only; sorting matrices and trees from method to remove highly variable sites.