Additional file 2: Table S1. of Phylogenomics of the olive tree (Olea europaea) reveals the relative contribution of ancient allo- and autopolyploidization events

List of species included in the reconstruction of the eight phylomes used in this study. Columns indicate, in this order, the species code for each species, the species name, the source for the protein and the coding DNA sequences, and the phylome in which the species was used (O. europaea var. europaea-215, F. excelsior-216, M. guttatus-217, S. indicum-218, U. gibba-219, S. miltiorrhiza-220, O. e. var. europaea-221, and O.e. var. sylvestris-222). Table S2. List of the GO terms enriched in the expanded protein families and at each evolutionary period as described in Fig. 1b. The first column shows the GO term, the second, the term level, the third, the p value, and the fourth, the term name. Table S3. List of parsimony scores for each of the different hypothesis shown in Additional file 9: Figure S8; and considering the two sets of trees with EST data. Nodes are named as shown in Fig. 3. Table S4. Syntenic regions between coffee and olive used in Fig. 4. In the first column, we can see the letter of the graph. The second and sixth columns show the scaffold names used in the graph (names starting with “C” are for coffee and “O” are for olive). The third and seventh columns show the scaffold names of the genome in coffee and olive, respectively. The fourth and fifth columns show the start and end of the region in coffee. The eighth and ninth columns show the start and end of the syntenic region in olive. (XLS 698 kb)