Additional file 1 of Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes

Supplementary Figures. Supplementary Figure 1 (a to h). Chromosomal TE density. Main transposable element order density in 50 kb non-overlapping windows. Only mapped and oriented scaffolds are present, N90 scaffolds for D. buzzatii st-1 (a to d), and N80 scaffolds for D. mojavensis (e to h). Changes in dot colors denote scaffold changes. Supplementary Figure 2. D. buzzatii j-19 Order correction. Order contribution (kb) to D. buzzatii j-19 genome before (blue) and after (red) the coverage-based correction. Supplementary Figure 3. D. buzzatii j-19 Superfamily correction. Superfamily contribution (kb) to D. buzzatii j-19 genome before (blue) and after (red) the coverage-based correction. (ZIP 792 kb)