遇见数据集

COMET reference panels and example data

收藏
Zenodo2026-11-04 更新2026-11-05 收录
官方服务:

资源简介:

Data for COMET (Cell-of-Origin from METhylation), which assigns individual long reads (PacBio HiFi / Oxford Nanopore) to their cell type of origin from their CpG methylation: https://github.com/fanglab/COMET. Reference panels (hg38, bgzipped + tabix-indexed BED: chrom, start, end, one methylation level per cell type), used by comet assign --tissue: blood.atlas.bed.gz: B_mem, B_naive, Myeloid, NK, T_ag_exp, T_naive brain.atlas.bed.gz: Exc_neuron, Inh_neuron, Astrocyte, Microglia, Oligodendrocyte, OPC colon.atlas.bed.gz: Epi_Endo, Fibroblast, Macrophage Example data for example/run_example.sh in the repository (PacBio HiFi, hg38, autosomes, 0.5X; base qualities and all tags except np, MM, ML and RG removed): colon_tumor.bam and colon_normal.bam (a colorectal tumor and its matched normal colon) and colon_fib_cell_line.bam (a colon fibroblast cell line). Download with example/download_example_data.sh. md5sum.txt lists the checksums of all files.

提供机构:
Zenodo
创建时间:
2026-11-03
二维码
社区交流群
二维码
科研交流群
商业服务