Environmental data from: Feeding strategy and dietary preference shape the microbiome of epipelagic copepods in a warm nutrient-impoverished ecosystem

Copepods provide a rich organic microenvironment allowing the settlement
and proliferation of microorganisms, forming dynamic microbial hotspots in
the oceans. Such symbiotic associations in the plankton were previously
hypothesized to be especially developed in warm oligotrophic seas, as they
may serve as alternative sources of nutrients in biologically-poor waters.
Aiming to better understand how copepod microbiomes are shaped in an
oligotrophic sea, we characterized microbiota associated with three
dominant coastal epipelagic copepod species in the ultra-oligotrophic
Eastern Mediterranean Sea using amplicon sequencing of the 16S rRNA gene.
Our results show that copepod-associated microbial communities were
host-specific rather than determined by seasonal environmental changes. In
the filter-feeding copepod with a tendency to herbivory, Temora stylifera,
microbial diversity was low and relatively stable throughout the year. In
contrast, omnivorous copepods, the ambush-feeding Oithona nana, and the
mixed-feeding Centropages ponticus harbored more diverse microbiomes
dominated by transient taxa. We suggest that filter-feeding strategy and
narrow food spectrum can limit copepod-microbe interactions, while the
ambush and mixed feeding strategies combined with omnivory confer higher
microbial diversity. Filter feeders may reduce the recruitment of
opportunistic microbes by maintaining high fidelity associations, as
indicated by the large number of core taxa in T. stylifera. We underline
the importance of the copepod-microbe associations in
nutrient-impoverished ecosystems, based on predicted enrichment of
nitrogen metabolism in the core microbiome, mostly during summer when the
shallow coastal waters are nitrogen-depleted.