Figure 4: Epitope Maps and confusion matrix with BM5.5 Crystal inputs

One of AbEMap's applications is to map epitope on a given antigen crystal structure if the antibody structure (bound or unbound) is known. The results in this dataset are pdb files of the 21 antigens in Zhiping Weng's docking benchmark v. 5.5 with their b-factor changed to our protocol's score to reflect the likelihood of each atom being in the epitope when in complex with the respective antibodies. The summary confusion matrix (residue based) for the epitope mapping done by AbEMap on 21 of the new antigens added to BM5.5 with antibody crystal structures as input is also included. The text file contains the True Positive (TP), False Positive (FP), False Negative (FN) and True Negative (TN) counts for each antibody-antigen complex at different residue ranking thresholds (Top1, Top5, Top10, ... Top120). This confusion matrix is used to generate Fig 4.