Additional file 8: of In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans

SNPs and InDels between the isolates of the t331 lineage. The mutations were detected with the â Basic Variant Detectionâ implemented in the CLC Genomics Workbench 8.0.5. SNP stands for single nucletiode polymorphism, MNP for multi nucleotide polymorphism; fs is the abbreviation of frameshift. For MNPs, every changed base is counted as a SNP in Fig. 5. It is also given if a SNP is synonymous or non-synonymous. If the SNP changes the amino acid, the new amino acid is reported. The nomenclature of the sequence variants can be viewed on http://www.hgvs.org/mutnomen/ . (XLSX 30 kb)