Additional file 3 of Fine mapping chromatin contacts in capture Hi-C data

Supplementary Data. The processed CD4 and macrophage data are in supplementary data supp-data.tgz. This gzipped archive contains .csv files (suppdata-*.csv), one for each experiment, with bait and prey hindIII fragment IDs together with columns: ∙ N read count ∙ residual NB residual ∙ mppc MPPC ∙ beta.post posterior expectation of β ∙ chicago CHiCAGO score (only for CD4 cells) and two annotation files: ∙hind-positions.csv gives the chromosome co-ordinates of each hindIII fragment ∙bait2gene.csv gives the links between promoter baits and annotated genes, using ensembl 75. (ZIP 673,425 kb)