Additional file 1 of POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling
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https://springernature.figshare.com/articles/dataset/Additional_file_1_of_POSMM_an_efficient_alignment-free_metagenomic_profiler_that_complements_alignment-based_profiling/26573629/1
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Additional file 1. Table S1: Genomes in the custom database for POSMM. Table S2: Final parameters for each logistic regression model. Models are taxonomic rank and model order specific, and are the result of Bayesian optimization with parameters described in the Methods section. Table S3: Species-level performance (Sensitivity, Precision, and F1 score), on the three simulated metagenome datasets by Kaiju, KrakenUniq, POSMM (at the confidence thresholds of 0, 0.25, 0.5, 0.75), and Kraken2 (at the confidence thresholds of 0, 0.25, 0.5, 0.75), and a hybrid of Kraken2 (at the threshold of 0) and POSMM (at the threshold of 0.25).
提供机构：
Burks, David J.; Pusadkar, Vaidehi; Azad, Rajeev K.
创建时间：
2024-08-13
