Additional file 3: of Refining a steroidogenic model: an analysis of RNA-seq datasets from insect prothoracic glands

Table S3. Tabulation of 16,550 unique loci based on the TransDecoder and Cufflinks output. Data from Additional file 2: Table S2 was manually annotated to filter out duplicate entries based on locus and protein sequence. Columns E to H are the TransDecoder output, columns I to P are the Cufflinks output, columns R to Y are the Bowtie2 output [28], columns Z and AA are the results of the Blastp analysis against the Bm protein reference sequences (NCBI annotation release 102) and columns AB to AE are the results of the g:Orth [40] and OrthoDB [107] output. In cases where a gene model was included between the test ID coordinates (Column D), this is indicated using the nomenclature of KAIKObase ( http://sgp.dna.affrc.go.jp/KAIKObase/ ) or it is left empty. Using this criterion, we identified 2265 unmapped loci. (XLSX 8960 kb)