Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of P7 mouse pancreas (jrc_mus-pancreas-4)
收藏DataCite Commons2025-06-04 更新2024-07-13 收录
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https://janelia.figshare.com/articles/dataset/Refined_automatic_nuclei_segmentations_in_near-isotropic_reconstructed_volume_electron_microscopy_FIB-SEM_of_P7_mouse_pancreas_jrc_mus-pancreas-4_/25352224
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<b>Segmentation description:</b> Nuclei segmentations in jrc_mus-pancreas-4 using Cellpose 2.0 with minimal manual corrections.<b>Software program</b>: Cellpose 2.0<b>Software program DOI</b>: https://doi.org/10.1038/s41592-022-01663-4<b>GPU: </b>RTX A6000<b>RAM: </b>256.0 GiB<b>Label voxel size (nm)</b>: 128 x 128 x 128 (x, y, z)<b>Reconstructed data dimensions (µm)</b>: 146.23, 113.04 , 115.045 (x, y, z)<b>Classes annotated</b>: Nucleus<b>Source dataset (EM) ID</b>: jrc_mus-pancreas-4<b>Source dataset (EM) voxel size (nm)</b>: 8.0 x 8.0 x 8.0 (x, y, z)<b>Source dataset (EM) data dimensions (µm)</b>: 146.27, 113.04 , 115.05 (x, y, z)<b>Source dataset (EM) DOI</b>: https://doi.org/10.25378/janelia.23411843<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-pancreas-4/jrc_mus-pancreas-4.zarr/recon-1/labels/inference/segmentations/nuc/<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-pancreas-4<br>
提供机构：
Janelia Research Campus
创建时间：
2024-03-06
