Additional file 1: of Coordinate regulation of long non-coding RNAs and protein-coding genes in germ-free mice

Table S1. Mapping statistics of RNA-Seq data in various organs from CV and GF mice. Sample IDs, total reads sequenced, total reads mapped, and percentage of reads mapped to the mouse genome are shown. Table S2. lncRNA-PCG pairs in each organ investigated. The gene IDs, chromosome coordniates, gene expression in each individual sample per organ, log2 fold change, as well as FDR-BH (q value) for both lncRNAs and the paired PCGs are shown. Table S3. Regulation of intergenic lncRNAs in liver by the absence of gut mirobiome. Table S4. Regulation of intergenic lncRNAs in duodenum by the absence of gut mirobiome. Table S5. Regulation of intergenic lncRNAs in jejunum by the absence of gut mirobiome. Table S6. Regulation of intergenic lncRNAs in illeum by the absence of gut mirobiome. Table S7. Regulation of intergenic lncRNAs in colon by the absence of gut mirobiome. Table S8. Regulation of intergenic lncRNAs in BAT by the absence of gut mirobiome. Table S9. Regulation of intergenic lncRNAs in WAT by the absence of gut mirobiome. Table S10. Regulation of intergenic lncRNAs in skeletal muscle by the absence of gut mirobiome. (XLSX 279 kb)