Mean diversity indices and neutrality tests across the 24 independent genomic regions sequenced in the filtered population dataset of Western Pygmies (WPYG), Eastern Pygmies (EPYG), and African farmers (AGR).

aTD: Tajima's D; D*: Fu and Li's D*; Fs: Fu's Fs.bNeutrality statistics in bold are statistically significant at the 5% level for all tests, except Fu's Fs (set at 2%). Variances of neutrality statistics across autosomal regions are reported in Table S4.