Genome assemblies for "Versatile genome assembly evaluation with QUAST-LG"

Supplementary data for A. Mikheenko, A. Prjibelski, V. Saveliev, D. Antipov, A. Gurevich. Versatile genome assembly evaluation with QUAST-LG. ISMB 2018 PROCEEDINGS (Bioinformatics journal)

Reference genomes of

Saccharomyces cerevisiae (yeast) version R64-1-1 

Caenorhabditis elegans (worm) version WBcel235

Drosophila melanogaster (fruit fly) version BDGP6

And de novo genome assemblies of

Yeast_PB (S. cerevisiae, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and PacBio SMRT)

Yeast_NP (S. cerevisiae, genome size: 12.1 Mb): Canu, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and Oxford Nanopore)

Worm_PB (C. elegans, genome size: 100.3 Mb): Canu, FALCON, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and PacBio SMRT)

Fly_MP (D. melanogaster, genome size: 137.6 Mb): ABySS2, MaSuRCA, Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends and mate-pairs)

Human_MP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and mate-pairs)

Human_NP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and Oxford Nanopore)

Each pack (items 1-4) is accompanied with the upper bound assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information, interactive QUAST-LG reports, and links to de novo assemblies of the human datasets please visit http://cab.spbu.ru/software/quast-lg/ or write to [e-mail].