This repository contains the complete reproducibility package for the paper: Layer Probing Reveals Functional Structure in Kinase Protein Language Model Embeddings It provides all dataset mani
We introduce two LMs, a pretrained foundation model REMME, aimed at understanding the DNA context of metagenomic reads, and the fine-tuned REBEAN for predicting the enzymatic potential encoded within
hypothetical acetyltransferase from P.aeruginosa PA01 Descriptor: conserved hypothetical protein Authors: Nocek, B, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2005-02-1
We present an enzyme protein function identification algorithm, Catalytic Site Identification (CatSId), based on identification of catalytic residues. The method is optimized for highly accurate templ
