Intrachromosomal Hi-C Contact Lists And Matrices Of Lymphoma Cell Lines

Hi-C datasets generated in Donaldson, Sungalee, Zufferey, Tavernari et al. are provided as intrachromosomal contact lists and matrices, divided by cell line/condition and chromosome.<br> <br> The following lymphoma cell lines/conditions are available:<br> - Karpas-422 (KARPAS_DMSO and KARPAS_GSK treatment)<br> - WSU-DLCL2 (WSU_DMSO and WSU_GSK treatment)<br> - OCI-Ly19 (LY19WT_DMSO)<br> - OCI-Ly19 expressing the mutated protein EZH2Y646F (LY19Y646F_DMSO)<br> <br> Contact lists are provided as compressed plain-text files in which each row represents a Hi-C contact. Column fields are described below:<br> 1) strand of read 1 (0=forward, 16=reverse)<br> 2) chromosome of read 1<br> 3) position on the chromosome where read 1 aligned<br> 4) strand of read 2 (0=forward, 16=reverse)<br> 5) chromosome of read 2<br> 6) position on the chromosome where read 2 aligned<br> 7) mapping quality of read 1<br> 8) name of the read pair as seen in the FASTQ files<br> 9) mapping quality of read 2<br> <br> Intrachromosomal Hi-C matrices are provided in .hic format for visualization with JuiceBox software.