Whole-genome phylogenetic reconstruction as a powerful tool to reveal homoplasy and ancient rapid radiation in waterflea evolution

The Supplementary Material (and text) to Van Damme et al., contains 10 Supplementary Figures (Figs S1-S10), 5 Supplementary Tables (Tables S1-S5), Supplementary Materials and Methods (ST1), Supplementary Discussion (ST2) and a complete reference list to the manuscript and supplement (Supplementary References SR1). All Supplementary material and text have been peer-reviewed as part of the manuscript. The supplementary discussion provides an additional framework including the importance of the findings of the phylogenomic study for the interpretation of evolution in the Cladocera.

Methods
See main manuscript (Van Damme, Cornetti, Fields & Ebert in Systematic Biology) and additional materials and methods under Supplementary Material (ST1).