Supplementary data files for Manzano-Marín et. al. 2023 "Evolution of an alternative genetic code in the Providencia symbiont of the haematophagous leech Haementeria acuecueyetzin"

The data set consists of siz folders: <strong>1)</strong> "genome_data": GenBank-formatted annotation files for newly sequenced <em>Providencia siddallii</em> endosymbionts. <strong>2)</strong> "orthoMCL_data": Flat-text output files from the OrthoMCL pipeline. <strong>3)</strong> "phylongey": MrBayes run files for <em>Providencia</em> spp. Bayesian phylogenetic inference. <strong>4)</strong> "UGA_proteins_and_genes": FASTA-formatted alignments of UGA-containing protein-coding gene sequences from figure 3 and table 3. <strong>5)</strong> "RepeatModeler_Prsiddallii": Log files for RepeatModeler runs of <em>P. siddallii</em> genomes. <strong>6)</strong> "checkM2_Psiddallii": checkM2 input and output files for <em>P. siddallii</em> protein sets. <strong>7)</strong> "breseq_runs": breseq output folders for variant calling on newly assembled genomes. <strong>8)</strong> "GSAlign_Prsiddallii_GTOCOR": output files of variant calling using GSAlign between <em>P. siddallii</em> strain GTOCOR1 (sampled in 2015 and reported in Manzano-Marín <em>et. al.</em> 2015 <em>GBE</em>) and GTOCOR2 (sampled in 2019 and reported in the associated work).