A sample list of detected transcripts with putative stress-regulated alternative splicing.

The listed genes were used for validation of predicted cold-regulated alternative splicing events by RT-PCR. All genes, except AT1G47530, were not defined as cold responsive based on showing less than 2 and more than -2 fold change (FDR aExample of cold responsive gene.bAlternative splicing types are intron retention (r) or unknown (u, possible exon skipping, alternative 5'/3' or intron retention).cThe alternatively spliced intron is not completely excised in either cold treatment or control (ctrl).dPredictions that were confirmed by RT-PCR.