Surface code data and analysis

Surface code data and analysis for "Architectural mechanisms of a universal fault-tolerant quantum computer", 2025, by Dolev Bluvstein, Alexandra A. Geim, Sophie H. Li, Simon J. Evered, J. Pablo Bonilla Ataides, Gefen Baranes, Andi Gu, Tom Manovitz, Muqing Xu, Marcin Kalinowski, Shayan Majidy, Christian Kokail, Nishad Maskara, Elias C. Trapp, Luke M. Stewart, Simon Hollerith, Hengyun Zhou, Michael J. Gullans, Susanne F. Yelin, Markus Greiner, Vladan Vuletic, Madelyn Cain, and Mikhail D. Lukin. SurfaceCodeAnalysis.ipynb loads in the raw data (i.e. raw atom measurement 0,1,loss results), implements decoding, analyzes the results, and generates the plots.Analysis notebook uses versions: python == 3.9.13 numpy==1.22.4 matplotlib==3.7.0 statsmodels==0.13.0 pandas==1.5.3 stim==1.14.0 lightning==2.4.0 torch==2.4.0 torchmetrics==0.11.4