RNA-Seq output data for: SMG1:SMG8:SMG9-complex integrity maintains robustness of nonsense-mediated mRNA decay

Output data from RNA-Seq analyses of various datasets used in the study "SMG1:SMG8:SMG9-complex integrity maintains robustness of nonsense-mediated mRNA decay".

Data is organized by zip folders for each individual RNA-Seq dataset, please see SMG189_datasets.csv or SMG189_samples.csv for dataset/sample metadata. Each zip folder contains the output of Salmon transcript quantification, DESeq2 DGE and edgeR DTE analyses, Log files, quality control analyses and metadata files (design.txt and experiment.txt).

Combined with the scripts and addititional information found at https://github.com/boehmv/2024_SMG189 these data should allow reproducing the analysis and plots in the manuscript.

Additional helper files (e.g. annotation) used in the analyses and too big for GitHub are provided here as well. E.g. 2024-10-28_SMG189_datasources.rds contains the DESeq2 and edgeR output ready for import via R.