Contingency table for mRmIL model RF00177_235_2HHH_1380_1383_1471_1475 showing the number of original (second column) and shuffled windows (third column) with the (“3D module+”) and without the module (“3D module–”).

Furthermore, the respective fold change (the ratio of 3D module- and 3D module+ windows and the ratio between original and shuffled windows with and without 3D modules) and the sum (“Total”) of each row and column is shown. The adjusted p-value of the FET equals 9.8 × 10−4 with an odds ratio of (227/111 833)/(62/53 326) = 1.746.