Additional file 1: of Silhouette Scores for Arbitrary Defined Groups in Gene Expression Data and Insights into Differential Expression Results

Detailed results for Blekhman’s RNA-seq count data. (a) Silhouette indices (s i ) for each sample i and the average (AS). The sample names (A1, A2, A3, B1, B2, or B3) for i correspond to those shown in Fig. 1b. (b) PDEG values at various FDR thresholds (1%, 5%, 10%, 20%, 30%, and 40% FDR). The values at 10% FDR were the same as those shown in Fig. 1b. (c) Percentages of true DEGs (PtrueDEG), defined as PDEG × (1 − FDR threshold), at corresponding FDR thresholds shown in (b). (XLSX 19 kb)