Xylocopa sonorina - UCSB-IZC00012194 - Bee Library - 73e389aa-5886-4c48-8778-ba8932d1bd7e hash://sha256/96bfde1efa599e0e8e61de18b14d61dd308737f684950e4079c04e9bc0f33958 hash://md5/4940f68c84cffa4412f7ffb98bb255bd

A biodiversity dataset graph: UCSB-IZC00012194

The intended use of this archive is to facilitate (meta-)analysis of the Xylocopa sonorina - UCSB-IZC00012194 - Bee Library - 73e389aa-5886-4c48-8778-ba8932d1bd7e (UCSB-IZC00012194). UCSB-IZC00012194 provides an animated GIF, and wavefront 3D object model, of bee specimen Xylocopa sonorina UCSB-IZC00012194 University of Santa Barbara Invertebrate Zoology Collection as well as the original digital data/image files that were used to find and build this animated GIF and associated 3D model. 

This dataset provides versioned snapshots of the UCSB-IZC00012194 network as tracked by Preston [2,3] between 2022-09-26 and 2022-09-26 using "preston update -u https://library.big-bee.net/portal/content/dwca/UCSB-IZC_DwC-A.zip". 

The archive consists of individual files with hexadecimal filenames (e.g., 03d2f9c6912935f54326d3e8c418cab6eddca5f69fb4f299e322cf2d114d0d03) to allow for parallel file downloads. The archive contains three types of files: index files, provenance logs and data files. Index files provide a way to links provenance files in time to establish a versioning mechanism. Provenance files describe how, when, what and where the UCSB-IZC00012194 content was retrieved. For more information, please visit https://preston.guoda.bio or https://doi.org/10.5281/zenodo.1410543 .  

To retrieve and verify the downloaded UCSB-IZC00012194 biodiversity dataset graph, download all files. Then, extract the archives into a "data" folder. Alternatively, you can use the preston[2] command-line tool to "clone" this dataset using:

$ java -jar preston.jar clone --remote https://zenodo.org/record/7114321/files

After that, verify the index of the archive by reproducing the following provenance log history:

$ java -jar preston.jar history --log tsv
urn:uuid:0659a54f-b713-4f86-a917-5be166a14110    http://purl.org/pav/hasVersion    hash://sha256/9a5ab7b2278f2dea3fa329e9426dd4712e288b2586616e64986c8f09e76658c6    
hash://sha256/af2bc3d2ac9ef865bedc33114e3c12232be58b46ac7033686d1eaed900c34a8d    http://purl.org/pav/previousVersion    hash://sha256/9a5ab7b2278f2dea3fa329e9426dd4712e288b2586616e64986c8f09e76658c6    
hash://sha256/781c17950a96d772c161552a8dff187ab427bcaa830f819758d0fdb8c60cf80e    http://purl.org/pav/previousVersion    hash://sha256/af2bc3d2ac9ef865bedc33114e3c12232be58b46ac7033686d1eaed900c34a8d    
hash://sha256/3239876613860452a47603946d3b961580447825b92cc7e566c3c9f4e8bb2b84    http://purl.org/pav/previousVersion    hash://sha256/781c17950a96d772c161552a8dff187ab427bcaa830f819758d0fdb8c60cf80e    
hash://sha256/419548ae006070af3ac9b1bbc90e9e9d51bf36131b23e8e057803cf7086a6842    http://purl.org/pav/previousVersion    hash://sha256/3239876613860452a47603946d3b961580447825b92cc7e566c3c9f4e8bb2b84    
hash://sha256/c9696c514e404b240d2362f0db545917e357d62c9f6c26b0b7a0b7df6444285e    http://purl.org/pav/previousVersion    hash://sha256/419548ae006070af3ac9b1bbc90e9e9d51bf36131b23e8e057803cf7086a6842    
hash://sha256/7d5a7fa413535390375687ff4cad53568b04761e5108da24400446bc7e8d57bb    http://purl.org/pav/previousVersion    hash://sha256/c9696c514e404b240d2362f0db545917e357d62c9f6c26b0b7a0b7df6444285e    
hash://sha256/86aec74994e16ea4bf509141b406546cdc491522705d948eee1f2b4ccefbd4b1    http://purl.org/pav/previousVersion    hash://sha256/7d5a7fa413535390375687ff4cad53568b04761e5108da24400446bc7e8d57bb    
hash://sha256/dcd61980ca9d78669e523fa643c9fa47e255481465384f98253f1b1ac7a5a8d0    http://purl.org/pav/previousVersion    hash://sha256/86aec74994e16ea4bf509141b406546cdc491522705d948eee1f2b4ccefbd4b1    
hash://sha256/8ecc7754cbab0c1ae169ed868bd9e4e68f7c592bb3609f27b32334c0a6c5e89f    http://purl.org/pav/previousVersion    hash://sha256/dcd61980ca9d78669e523fa643c9fa47e255481465384f98253f1b1ac7a5a8d0    
hash://sha256/d3c2c1ec6697a627607caab51135afa4b8d35c4795c9267f5c24ed3009b77fbe    http://purl.org/pav/previousVersion    hash://sha256/8ecc7754cbab0c1ae169ed868bd9e4e68f7c592bb3609f27b32334c0a6c5e89f    
hash://sha256/96bfde1efa599e0e8e61de18b14d61dd308737f684950e4079c04e9bc0f33958    http://purl.org/pav/previousVersion    hash://sha256/d3c2c1ec6697a627607caab51135afa4b8d35c4795c9267f5c24ed3009b77fbe    

To check the integrity of the extracted archive, confirm that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while.

$ java -jar preston.jar verify
replace wwith preston verify | head -n4

Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston". 

Files in this data publication:

--- start of file descriptions ---

-- description of archive and its contents (this file) --
README 

-- executable java jar containing preston [2,3] v0.4.5. --
preston.jar

-- wavefront 3D object files
UCSB-IZC00012194.jpg
UCSB-IZC00012194.mtl
UCSB-IZC00012194.obj

-- animated gifs
bee.gif
UCSB-IZC00012194.gif

-- QR code
label.png

-- preston archives containing UCSB-IZC00012194 data files, associated provenance logs and a provenance index --
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--- end of file descriptions ---

References 

[1] Xylocopa sonorina - UCSB-IZC00012194 - Bee Library - 73e389aa-5886-4c48-8778-ba8932d1bd7e (UCSB-IZC00012194, https://library.big-bee.net/portal/content/dwca/UCSB-IZC_DwC-A.zip) accessed from 2022-09-26 to 2022-09-26 with provenance hash://sha256/96bfde1efa599e0e8e61de18b14d61dd308737f684950e4079c04e9bc0f33958.
[2] https://preston.guoda.bio, https://doi.org/10.5281/zenodo.1410543 . 
[3] MJ Elliott, JH Poelen, JAB Fortes (2020). Toward Reliable Biodiversity Dataset References. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2020.101132

This project made possible by National Science Foundation Awards: 1839201, 2102006, 2101929, 2101908, 2101876, 2101875, 2101851, 2101345, 2101913, 2101891 and 2101850.