Pangenome graph analysis reveals extensive effector copy-number variation in spinach downy mildew

Data produced for the comparison of six Peronospora effusa isolates. For each isolate, we provide the genome assemblies, gene and repeat annotation, effector clustering, and gene variation. Additionally, we provide the repeat library that was used to annotate the transposable elements for each isolate and the pangenome graph. DOI: https://doi.org/10.1101/2024.05.30.596583