We annotated repeats in assemblies through two rounds of annotation with RepeatMasker4.1.0 (Smit et al. 2020), the first round used custom repeat libraries generated by RepeatModeler2 for each respect
Supplementary material submitted for the article "Prevalence and implications of contamination in public genomic resources : a case study of 43 reference arthropod assemblies". Authors: Clementine M.