Pan-genome of 10,000 E. coli isolates

The complete metadata of 10,146 high quality <i>E. coli</i> genomes isolated from human hosts (F1).Description and complete profiling of 50 <i>E. coli </i>lineages which represent the majority of publicly available human-isolated <i>E. coli</i> genomes (F2). Phylogenetic trees presented in the manuscript (with 500 genomes and with 50 genomes).The complete pan-genome of the collection which includes: A FASTA file containing the representative sequence of each gene of the gene pool (F3).Complete gene presence-absence across all isolates (F4).The frequency of each gene within each of the lineages (F5)Representative sequences from each lineage of the final set of genes in the gene-pool (i.e. a representative sequence from each lineage) (F6)<br>