Molecular clocks and archaeogenomics of a Late Period Egyptian leaf provide new timestamps on date palm domestication

This repository contains the Supplementary Files S1, S2, S3 and S4.<br><b>File S1:</b> Output of Magicblast analyses, revealing the proportion of nuclear and organellar endogenous ancient DNA content of the Saqqara leaf, as implemented using three reference genomes. <b> </b> <b>File S2:</b> Maximum Likelihood analysis of whole plastome sequences showing the placement of the Saqqara specimen amongst <i>Phoenix </i>species. <b>File S3: </b>Uncorrected P-distance split network with corresponding bootstrap support values produced from nuclear positions shared by the Saqqara specimen and modern accessions. <b>File S4:</b> Plastid and nuclear alignments employed to estimate absolute times of divergence. <br>