EcOH: In silico serotyping of E. coli - Supplementary material

This supplementary data accompanies the manuscript "In silico serotyping of E. coli from short read data identifies limited novel O loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages".<br> <br> Sequences used in the EcOH database are given in EcOH Supplementary Table 1. <br> <br> NCBI preliminary validation results are given in EcOH Supplementary Table 2. <br> <br> Validation of phenotype from genotype on 197 EPEC isolates are in EcOH Supplementary Tables 3-5. <br> <br> Diversity analyses results on 1547 E. coli are given in EcOH Supplementary Table 6. Supplementary Figures 1-3 are given in EcOH Supplementary Figures. <br> <br> Sequences and annotations for the novel loci identified in GEMS and the ETEC and GenomeTrakr datasets are given in GEMS_6novel_Oantigen.gbk and GT_ETEC_32novel_Oantigen.gbk. Three O-antigens with variant alleles are in Variants_prototypical_Oantigens.gbk.