Additional file 2: of Integrated genomics approach to identify biologically relevant alterations in fewer samples

Additional Tables S1-S8: Copy number alterations of known genomic locations identified in HNSCC cell lines. Copy number alterations in halmark genes identified in HNSCC cell lines. Gene expression of hallmark genes by RNA sequencing and qPCR. Features of whole exome and transcriptome sequencing. Validation of mutations in hallmark and novel genes. Details of mutations identified by integrated analysis in HNSCC cell lines. Primer sequences used for Sanger sequenicng based validation of mutations. Primers used for copy number and gene expression study using qPCR. (ZIP 249 kb)